%%%%%%%%%%%%% Doing my own template
%%%%%%%%%%%%% Following the specifications of
% http://bu.univ-amu.libguides.com/c.php?g=511743&p=4025195
%%%%%%%%%%%%% Sober amu thesis template
% LAYOUT %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% Using the report class
\documentclass[12pt, % Recommended
twoside, % SHOULD BE
%singlespacing
]{report}
%%% Margins
\usepackage[a4paper,
%width=150mm,
top=30mm,
bottom=30mm,
right=30mm,
left=30mm,
% Offset to bind pages
bindingoffset=6mm,
% To make room for the header
headheight=20mm,
]{geometry}
% Line spacing - 1 is normal, 1.3 is onehalf and 1.6 is double spacing
\linespread{1}
%%% Change titles & stuff
\makeatletter
\renewcommand{\@chapapp}{Section}
\makeatother
\renewcommand{\abstractname}{Résumé}
\renewcommand{\contentsname}{Table des matières}
\renewcommand{\appendixname}{Table des annexes}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Miscellaneous packages %%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% Really basic packages here to handle languages
\usepackage[english, french]{babel}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
% The font
\usepackage{concmath}
% Highlight stuff for revisions + colors and units
\usepackage{color}
\usepackage[x11names]{xcolor}
\usepackage{graphicx}
\usepackage{amsmath,amssymb, bm}
\usepackage[squaren, Gray, cdot]{SIunits}
% Where your pictures are
\graphicspath{ {pics/} }
%%% Header & Footer
\usepackage{fancyhdr}
\pagestyle{fancy}
\fancyhead{}
\fancyhead[RO,LE]{\rightmark}
\fancyfoot{}
\fancyfoot[LE,RO]{\thepage}
\fancyfoot[CE,CO]{\leftmark}
\fancyfoot[RE,LO]{Prénom Nom}
\renewcommand{\headrulewidth}{0.4pt}
\renewcommand{\footrulewidth}{0.4pt}
% Some symbols
\usepackage{textcomp}
% To include pdfs, like articles, directly
\usepackage{pdfpages}
% For figures
\usepackage{caption}
\usepackage{subcaption}
% For text boxes spanning multiple pages
% And to add a color to it
\usepackage{framed}
% Access the different colors here
% http://mirrors.standaloneinstaller.com/ctan/macros/latex/contrib/xcolor/xcolor.pdf page 40
\colorlet{shadecolor}{LightSteelBlue1}
\colorlet{framecolor}{Blue4}
% New environment for shaded frames
\newenvironment{frshaded}{%
\def\FrameCommand{
\fboxrule=\FrameRule
\fboxsep=\FrameSep
\fcolorbox{framecolor}{shadecolor}
}%
\MakeFramed {\FrameRestore}}%
{\endMakeFramed}
% Use like this
%\begin{frshaded}
%\end{frshaded}
% To make todo notes, exemple in the intro
\usepackage[textwidth=3cm]{todonotes}
% For appendices
\usepackage[toc,page]{appendix}
% And change the names
\renewcommand{\appendixname}{Annexe}
\renewcommand{\appendixtocname}{Annexes}
\renewcommand{\appendixpagename}{Annexes}
% Line breaks in text
% Warning: should find something better for urls >.<
\sloppy
% Add quotes
\usepackage{dirtytalk}
% Fancy tables
\usepackage{multirow}
% Urls
\usepackage{url}
% for pdf docs to read on computers
% use this when compiling the pdf version (to send by mail)
% comment it when you want to print it
\usepackage{hyperref}
% Package only for the template
\usepackage{lipsum}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Glossary %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% if you need a glossary
% \usepackage{glossaries}
% \makeglossaries
% \newglossaryentry{ABF}{name=ABF, description={Adaptive Biasing Force}}
% Use \newglossaryentry{utc}{name=UTC, description={Coordinated Universal Time}} to add a glossary entry within the document
% Use gls{utc} to use that entry somewhere
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Bibliography %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Required to generate language-dependent quotes in the bibliography
\usepackage[autostyle=true]{csquotes}
% Use biber - way better than bibtex
\usepackage[backend=biber,
% citestyle=numeric-comp,
% bibstyle=numeric,
citestyle=authoryear,
bibstyle=authoryear,
%dashed=false,
sorting=nyt,
natbib=true,
doi=true,
url=false,
isbn=false,
eprint=false,
giveninits=true,
uniquename=init,
maxcitenames=1,
minbibnames=6,
maxbibnames=6
]{biblatex}
% The filename of the bibliography
\addbibresource{all.bib}
% To escape some underscores in the .bib exported from mendeley
\DeclareSourcemap{ % Used when .bib/Bibliography is compiled, not when document is
\maps{
\map{ % Replaces '{\_}', '{_}' or '\_' with just '_'
\step[fieldsource=url,
match=\regexp{\{\\\_\}|\{\_\}|\\\_},
replace=\regexp{\_}]
}
\map{ % Replaces '{'$\sim$'}', '$\sim$' or '{~}' with just '~'
\step[fieldsource=url,
match=\regexp{\{\$\\sim\$\}|\{\~\}|\$\\sim\$},
replace=\regexp{\~}]
}
\map{ % Replaces '{\_}', '{_}' or '\_' with just '_'
\step[fieldsource=doi,
match=\regexp{\{\\\_\}|\{\_\}|\\\_},
replace=\regexp{\_}]
}
\map{ % Replaces '{'$\sim$'}', '$\sim$' or '{~}' with just '~'
\step[fieldsource=doi,
match=\regexp{\{\$\\sim\$\}|\{\~\}|\$\\sim\$},
replace=\regexp{\~}]
}
}
}
% Start with roman numbers until the introduction
\pagenumbering{roman}
% handle the abbverviations ?
% Basic abbreviation page here, you can play around with the two "5cm"
% To increase or decrease the spacing between the abbreviation and the words
\usepackage{calc}
\makeatletter
\newcommand{\tocfill}{\cleaders\hbox{$\m@th \mkern\@dotsep mu . \mkern\@dotsep mu$}\hfill}
\makeatother
\newcommand{\abbrlabel}[1]{\makebox[5cm][l]{\textbf{#1}\ \tocfill}}
\newenvironment{abbreviations}{\begin{list}{}{\renewcommand{\makelabel}{\abbrlabel}%
\setlength{\labelwidth}{5cm}\setlength{\leftmargin}{\labelwidth+\labelsep}%
\setlength{\itemsep}{0pt}}}{\end{list}}
% crossed text, if you need it
\usepackage[normalem]{ulem}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{document}
%% Title page
\input{chapters/title}
% %%% Abstract
\input{chapters/abstract}
\input{chapters/remerciements.tex}
\tableofcontents
\listoffigures
\listoftables
% MAIN TEXT %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\input{chapters/abbrev.tex}
% normal numbering from here
\pagenumbering{arabic}
%%%% Each chapter is in a different file
%% In the [], how the chapter will be called in the table of contents
%% In the {}, the name of the chapter in the text
%% The chaptermark is the name of the chapter in the footer
%%% You want a small enough chaptermark or it will overflow to the sides
\chapter[Introduction]{Introduction}
\chaptermark{Introduction}
\input{chapters/intro}
\chapter[Matériel et méthodes]{Matériel et méthodes}
\chaptermark{Matériel et méthodes}
\input{chapters/methods}
\chapter[Chapitre 1: blabla]{Chapitre 1: blabla}
\chaptermark{Chapitre 1}
\input{chapters/chap1}
\chapter[Conclusion]{Conclusion}
\input{chapters/conclusion}
%%%% Bibliography before appendices
%%%% After the initial round, you need to fix it by hand depending on where you generate your .bib file from
%%%% Mendeley often messes with italics and accents for instance
\printbibliography
% Appendices
\input{chapters/appendix}
\end{document}