% Dissertation LaTeX Template
% Author: Karol Cieslik
% LinkedIn: https://www.linkedin.com/in/karolcieslik/
% I have developed this template over the years.
% I hope that it will be useful for others. 
% It works both for thesis in English and in Polish.
\documentclass[11pt,twoside]{report}
\usepackage[left=35mm,top=25mm,right=25mm,bottom=25mm]{geometry}
\usepackage{indentfirst}
\usepackage{polski}
\usepackage[polish,english]{babel}
\usepackage{amsmath} % Required for some math elements 
\usepackage[titletoc]{appendix}
\usepackage{rotating} 
\usepackage[
protrusion=true,
activate={true,nocompatibility},
final,
tracking=true,
kerning=true,
spacing=true,
factor=1100]{microtype}
\SetTracking{encoding={*}, shape=sc}{40}
\newsavebox{\myhbar}
\savebox{\myhbar}{$\hbar$}
\renewcommand*{\hbar}{\mathalpha{\usebox{\myhbar}}}
\usepackage[utf8]{inputenc}
\usepackage[version=3]{mhchem} % Package for chemical equation typesetting
\usepackage{siunitx} % Provides the \SI{}{} and \si{} command for typesetting SI units
\usepackage{graphicx} % Required for the inclusion of images
\usepackage{float}
\usepackage{wrapfig}
\usepackage{fancyhdr} % Custom headers and footers
\pagestyle{fancyplain} % Makes all pages in the document conform to the custom headers and footers
\setlength\parindent{0.75cm}
\linespread{1.15}
\fancyhf{} 
\fancyfoot[R]{\thepage}
\pagestyle{fancy}
\fancyhead[L]{\scshape\nouppercase{\rightmark}}
\setlength{\headheight}{13pt} 
\usepackage{titlesec}
 \titleformat{\chapter}[display]   
{\normalfont\huge\bfseries}{\chaptertitlename\ \thechapter}{20pt}{\Huge}   
\titlespacing*{\chapter}{0pt}{-20pt}{20pt}
\usepackage{caption}
\usepackage[font={small}]{caption}
\usepackage{enumerate}
\usepackage{multirow}
 \graphicspath{{wykresy/}}
   \usepackage[unicode=true]{hyperref}
\renewcommand\refname{Bibliografia}
\newcommand{\horrule}[1]{\rule{\linewidth}{#1}} 
% In the SI package you can declare your own units which comes in handy
\DeclareSIUnit{\ions}{ions} 
\DeclareSIUnit{\langmuir}{L} 
\usepackage{hypcap}
\usepackage{booktabs}
\newcommand\doubleRule{\toprule\toprule}
\newcommand\doublerule{\toprule\specialrule{\heavyrulewidth}{\doublerulesep}{0.4em}}
\newcommand{\ra}[1]{\renewcommand{\arraystretch}{#1}}
\AtBeginDocument{\addtocontents{toc}{\protect\thispagestyle{empty}}}
\usepackage{emptypage}
\usepackage{etoolbox}
\patchcmd{\chapter}{plain}{plain}{}{}
\usepackage{hyperref}
\setlength{\belowcaptionskip}{-10pt}
\usepackage{enumitem}
\setlist[itemize]{noitemsep, topsep=0pt}
\usepackage{booktabs,caption}
\usepackage[flushleft]{threeparttable}
\usepackage{acronym} 
%this package is just useful for the template 
\usepackage{lipsum}  
\begin{document}
	\begin{titlepage}
	\centering
	%\vspace*{1cm}
	\Large
	\textsc{University Name \\ The name of the Institute \\ Department of Something or Other} \\ \vspace*{1\baselineskip}
	
	\includegraphics[width=0.25\textwidth,height=0.25\textheight,keepaspectratio]{uj_logo.jpg}
	
	\horrule{0.5pt} \\[0.4cm] % Thin top horizontal rule
	\Huge  The title of your thesis. Encompassing everything you have done in a short and interesting way. \\ 
	\horrule{2pt} \\[0.5cm] % Thick bottom horizontal rule
	
	\Large{Doctoral thesis \\ \textit{submitted by}}
	\vspace*{1\baselineskip}
	
	\LARGE \textbf{Name Surname} \\
		\vspace*{1\baselineskip}
	\Large{\textit{supervised by:} \\ prof. Name Surname \\}
		
	\vspace*{2\baselineskip}
	\Large{City, Year}
	
    \end{titlepage}
\shipout\null
\newpage
\thispagestyle{empty}
\vspace*{30px}
\begin{flushleft}
\large{Department Name\\
University name}
\end{flushleft}
\vspace*{1\baselineskip}
\hspace{5.31cm}{\textbf{\Large{Declaration}}
\vspace*{15px}
{\large{\lipsum[5]
\lipsum[12]
\vspace*{25px}
\begin{center}
	\begin{tabular}{lr}
		................................~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~&
		.......................................... \\
		{~~~~~~~~City, date} & {Your signature~~~~~~~}
	\end{tabular}
\end{center}
\noindent \hfill 
\noindent  \hfill }}}
\\
%the numbering should be different in the sections before the main body of the dissertation
\pagenumbering{roman}
\setcounter{page}{0}
\clearpage
\phantomsection
\addcontentsline{toc}{chapter}{Acknowledgements}
\include{chapters/acknowledgements}  
\clearpage
\phantomsection
\addcontentsline{toc}{chapter}{Acknowledgements in another language}
\include{chapters/Acknowledgements2}  
\clearpage
\phantomsection
\addcontentsline{toc}{chapter}{Abstract}
\include{chapters/abstract}  
\clearpage
\phantomsection
\addcontentsline{toc}{chapter}{Abstract in another language}
\include{chapters/Abstract2}   
\clearpage
\phantomsection
\addcontentsline{toc}{chapter}{Acronyms}
\include{chapters/acronyms}         
%the style of numbering of pages
\pagenumbering{arabic}
%you can add some chapters 
\tableofcontents
%you can add some chapters 
\include{chapters/introduction}
\include{chapters/experimental}
\include{chapters/goal}
\include{chapters/results}
\include{chapters/conclusions}
\clearpage
\phantomsection
\addcontentsline{toc}{chapter}{Bibliography}
%the bibliography style that you use
\bibliographystyle{ieeetr}
%the file which contains your references
\fancypagestyle{plain}{%
	\renewcommand{\headrulewidth}{0pt}%
	\fancyhf{}
	\fancyfoot[R]{\thepage}}
\bibliography{library.bib}
%It is good to have some appendix in your thesis - at least one
\clearpage
\phantomsection
\addcontentsline{toc}{chapter}{Appendix: Academic achievements}
\appendix
\include{chapters/appendix}
\end{document}